Changelog

[3.1.4] - 2026-09-22

Changed

• Max projection generation will now always include pyramids.

Fixed

• Fix crash when generating maximum projection for fused image with more than 512 planes.
• Fix display of pyramids on anisotropic images.

[3.1.3] - 2026-09-14

Fixed

• Fix wrong tile alignment when exceeding half of the overlap.

[3.1.2] - 2026-09-04

Fixed

• Fix crash when fusing after shading correction.
• Fix filtering of time points and channels not properly propagated to pyramid and maximum projection.
• Prevent steps from resetting when the dataset size changes.
• Fix license with no expiration date not being accepted.

[3.1.1] - 2026-07-23

Fixed

• Fix crash when fusing tiles that do not overlap in all views.
• Improve robustness of task cache system.

[3.1.0] - 2026-07-02

Added

• Add auto-downsampling option to deblur step to speed up processing. Only use downsampled image for background estimation, final image is still deblurred at full resolution.
• Add batch processing mode that allows to process multiple experiments.
• Allow selection of time point range and channels in input step.
• Add written data size estimation and show warning if there is not enough disk space.
• Add optional data writing of input.
• Add support for maximum projection along X and Y dimensions.

Fixed

• Fix crash when processing while it was already started by another user.

[3.0.5] - 2026-04-30

Fixed

• Fix crash when using fusion without the first settings profile selected.
• Fix crash when loaded dataset with partial alignment computation.

[3.0.4] - 2026-04-28

Fixed

• Fix alignment of tiles without signal.

[3.0.3] - 2026-04-15

Fixed

• Fix crash when using fusion.

[3.0.2] - 2026-04-10

Fixed

• Fix cropping on multiple positions.

[3.0.1] - 2026-03-24

Fixed

• Fix alignment of single plane images.
• Fix memory issues when aligning highly overlapping tiles with many planes.

[3.0.0] - 2026-03-12

Added

• Create processing tab allowing to post-process images.
• Add shading correction step.
• Add preview mode for the shading correction.
• Add Instant Computational Clearing (ICC) deblur step.
• Add preview mode for the deblur.
  ->
• Add alignment step that allows to align images.
• Compute alignment between views.
• Compute pairwise alignment between tiles.
• Compute global alignment.
• Add result visualization for alignment.
• Add preview mode for view alignments.
• Add preview mode for pairwise tile alignments.
  
• Add fusion step that will merge views and stitch tiles together based on their alignment.
• Add downsample step that reduces image size and resolution.
• Add crop step that allows to crop images along X, Y and Z dimensions for each pair of position and settings profile.
• Add about window with software information.
• Add compression with Zstandard for OME-TIFF files.
• Add export to Aivia TIFF.
• Add support for pyramids (writing/reading) allowing display of full mosaic in image viewer.
• Add uninstaller.

Changed

• Application is now installed in program files directory and data are stored in program data directory.

[0.0.2.0] - 2025-08-13

Added

• Add support for tiled images.

[0.0.1.0] - 2025-07-02

Added

• Implement image viewer that can open experiment directory.